Blog Posts | Joshua Berkowitz

7 Articles

computational biology ×

AI-Powered Breakthroughs in Nucleic Acid Design: How NucleoBench and AdaBeam Are Changing the Game

Designing DNA and RNA sequences for therapeutic use is a monumental challenge in biotechnology. Traditional trial-and-error methods fall short due to the immense complexity and sheer number of possibl...

AdaBeam AI biology benchmark computational biology gene therapy nucleic acid design NucleoBench open source

Jan 2, 2026

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News

Deep Learning Resurrects Ancient Antibiotics: Mining Extinct Proteomes for Modern Medicine

In a groundbreaking fusion of paleobiology and artificial intelligence, researchers from the University of Pennsylvania have pioneered a revolutionary approach to combat the escalating global antibiot...

antibiotic discovery antimicrobial resistance artificial intelligence computational biology deep learning drug discovery extinct organisms machine learning molecular de-extinction paleogenomics

Nov 4, 2025

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Papers

Harvard Researchers Are Programming Cells to Shape Themselves

Scientists are closing in on powerful new ways to instruct living cells to grow into complex forms as easily as coding a computer program. Thanks to groundbreaking work at Harvard, where researchers h...

AI bioengineering cellular biology computational biology machine learning organ design tissue engineering

Oct 3, 2025

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Paper2Agent: Transforming Research Papers into Interactive AI Agents

Research papers are traditionally require readers and reviewers to interpret code, methods, and results independently. Paper2Agent aims to transform published research into interactive AI agents allow...

AgentScope AI agents AutoGen Azure AI Agents Claude Code Code2MCP computational biology LangGraph MCP NotebookLM OpenAI Assistants OpenDevin open source reproducibility Stanford tutorial extraction

Sep 21, 2025

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Github Repos

AI In Drug Discovery: From Protein Structures to Molecular Interactions

Artificial intelligence is reshaping drug discovery, moving well beyond predicting static protein structures to modeling the intricate dance of biomolecular interactions. This leap is enabling scienti...

AI drug discovery AlphaFold biopharma innovation biotechnology computational biology machine learning protein interactions therapeutic design

Jun 24, 2025

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News

MIT Researchers Chart New Paths for Alzheimer’s Drug Targets Beyond Amyloid

Alzheimer’s disease has challenged the scientific community for decades, especially as treatments focused on amyloid plaques have not delivered the hoped-for results. In a promising shift, researchers...

Alzheimer's computational biology DNA repair drug discovery genetics MIT neurodegeneration RNA modification

May 25, 2025

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New Genetic Pathways Offer Hope for Alzheimer’s Drug Development

Alzheimer’s disease is a condition that affects millions globally and has traditionally been linked to amyloid plaques in the brain. Most drug development efforts have targeted these plaques but real-...

Alzheimer's computational biology DNA repair drug discovery genetics neurodegeneration RNA modification

May 20, 2025

0 2717

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